BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028D01LP1|AL428885
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 1799 0.0
3x_Contig1746 159 1e-38
3x_Contig384 153 7e-37
3x_Contig1276 149 1e-35
3x_Contig1625 145 2e-34
>3x_Contig1671
Length = 12265
Score = 1799 bits (907), Expect = 0.0
Identities = 908/909 (99%)
Strand = Plus / Plus
Query: 1 gatctgccattcaaattcggatgggctgatgattgtgttaataaatggaacagcggcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4806 gatctgccattcaaattcggatgggctgatgattgtgttaataaatggaacagcggcagg 4865
Query: 61 ttattgttttaccctgatatgcatctcaaactgtcagtatgtgtaatatcgaataattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4866 ttattgttttaccctgatatgcatctcaaactgtcagtatgtgtaatatcgaataattca 4925
Query: 121 tacctgtcttcaacgtttatttctaattgcgggttaatgtacgggaaaacctgttaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4926 tacctgtcttcaacgtttatttctaattgcgggttaatgtacgggaaaacctgttaaata 4985
Query: 181 aaaaaaaaaagaaaatagagaacgagcatgttgtggcacatttgagatatttatactgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4986 aaaaaaaaaagaaaatagagaacgagcatgttgtggcacatttgagatatttatactgta 5045
Query: 241 ggtctcctcagtttgagatcaacttgaaggtcattcaagcttttatctgtttgaggaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5046 ggtctcctcagtttgagatcaacttgaaggtcattcaagcttttatctgtttgaggaggt 5105
Query: 301 cctgggacacaaatgagaaaacagcacaataaccattcagtaaaatacgagtgacaagcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5106 cctgggacacaaatgagaaaacagcacaataaccattcagtaaaatacgagtgacaagcg 5165
Query: 361 acttaccgttgagctaagttgtcaaccatgactttcaacgaaagttgctgctttagctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5166 acttaccgttgagctaagttgtcaaccatgactttcaacgaaagttgctgctttagctca 5225
Query: 421 gttgggagagcgtatgactgaagttcataaggtcctgtgttcgatccacagaagcagcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5226 gttgggagagcgtatgactgaagttcataaggtcctgtgttcgatccacagaagcagcat 5285
Query: 481 ttcgatttatttttattgtcctttttgttgtccacgtgacaactattcgcatgtattccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5286 ttcgatttatttttattgtcctttttgttgtccacgtgacaactattcgcatgtattccc 5345
Query: 541 gttctaaagaaaaaagtcaatttgtcgatgaagaaaatcttgaaatttcgttgaacaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5346 gttctaaagaaaaaagtcaatttgtcgatgaagaaaatcttgaaatttcgttgaacaaag 5405
Query: 601 ttttattctctctctcttccaaaagttctttatgtgttgaggtaattaaagagctttcat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5406 ttttattctctctctcttccaaaagttctttatgtgttgaggtaattaaagagctttcat 5465
Query: 661 ctcctcagatcaacccaattaactcaattgaaccatcataactaacataatgtctgaaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5466 ctcctcagatcaacccaattaactcaattgaaccatcataactaacataatgtctgaaat 5525
Query: 721 tgcccaagactccaacgtttccattttttccaaaaatgaaaagaaggccagagaattgat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5526 tgcccaagactccaacgtttccattttttccaaaaatgaaaagaaggccagagaattgat 5585
Query: 781 cctaaagttgggattgaagccaatccaaggtgtttctagagtcactttcaagaagaagga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5586 cctaaagttgggattgaagccaatccaaggtgtttctagagtcactttcaagaagaagga 5645
Query: 841 tggtcaaatctttgctatcgacagaccagaagtttacaagtctcaaggkggtaactttgt 900
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5646 tggtcaaatctttgctatcgacagaccagaagtttacaagtctcaaggtggtaactttgt 5705
Query: 901 tgttttcgg 909
|||||||||
Sbjct: 5706 tgttttcgg 5714
>3x_Contig1746
Length = 26672
Score = 159 bits (80), Expect = 1e-38
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 402 aagttgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 461
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12142 aagtcgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 12201
Query: 462 cgatccacagaagcagcatttcgatttatttt 493
|||||||||||||||||||||| ||||||||
Sbjct: 12202 cgatccacagaagcagcatttctttttatttt 12233
>3x_Contig384
Length = 1678
Score = 153 bits (77), Expect = 7e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 407 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 1459
Query: 467 cacagaagcagcatttc 483
|||||||||||||||||
Sbjct: 1458 cacagaagcagcatttc 1442
>3x_Contig1276
Length = 6662
Score = 149 bits (75), Expect = 1e-35
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 402 aagttgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 461
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aagtcgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 651
Query: 462 cgatccacagaagcagcat 480
|||||||||||||||||||
Sbjct: 650 cgatccacagaagcagcat 632
>3x_Contig1625
Length = 13618
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 407 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8392 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 8333
Query: 467 cacagaagcagca 479
|||||||||||||
Sbjct: 8332 cacagaagcagca 8320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,141
Number of Sequences: 1807
Number of extensions: 14141
Number of successful extensions: 215
Number of sequences better than 1.0e-20: 5
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)